Flight From/To Manokwari| Merpati (www.merpati.com) | | Jakarta-Manokwari | 06.05 - 14.20 | transit @ Ujung Pandang | | Manokwari-Jakarta | 14.50 - 21.15 | transit @ Ujung Pandang |
| Batavia (www.batavia-air.co.id) | | Jakarta-Manokwari | 22.45 - 06.30 | transit @ Ujung Pandang | | Manokwari-Jakarta | 07.30 - 11.00 | transit @ Ujung Pandang |
| Sriwijaya (www.sriwijayaair.co.id) | | Jakarta-Manokwari | 00.30 - 09.20 | transit @ Ujung Pandang | | Manokwari-Jakarta | 10.05 - 15.20 | transit @ Ujung Pandang | | Surabaya-Manokwari | 18.40 - 09.20 | transit @ Ujung Pandang | | Manokwari-Surabaya | 10.05 - 14.35 | transit @ Ujung Pandang |
Flight From/To Biak| Merpati (www.merpati.com) | | Jakarta-Biak | 21.30 - 05.15 | transit @ Ujung Pandang | | Biak-Jakarta | 17.20 - 21.15 | | | Surabaya-Biak | 22.00 - 05.15 | transit @ Ujung Pandang | | Biak-Surabaya | 11.20 - 21.15 | |
| Garuda (www.garuda-indonesia.com) | | Jakarta-Biak | 21.10 - 05.05 | transit @ Ujung Pandang | | Biak-Jakarta | 09.50 - 13.25 | | | Surabaya-Biak | 19.05 - 05.05 | transit @ Ujung Pandang | | Biak-Surabaya | 09.50 - 18.55 | |
Flight From/To Sorong| Merpati (www.merpati.com) | | Surabaya-Sorong | 22.20 - 07.10 | transit @ Ujung Pandang | | Sorong-Surabaya | 13.05 - 19.30 | transit @ Ujung Pandang |
| Batavia (www.batavia-air.co.id) (Every Tuesday, Thursday, Sunday) | | Jakarta-Sorong | 22.45 - 07.00 | transit @ Ujung Pandang | | Sorong-Jakarta | 09.00 - 11.55 | transit @ Ujung Pandang |
| Lion (www2.lionair.co.id) (Every Monday, Wednesday, Friday) | | Manado-Sorong | 14.20 - 17.15 | | | Sorong-Manado | 09.25 - 10.15 | |
| Express Air (www.expressair.biz) (Daily) | | Surabaya-Sorong | 06.00 - 11.40 | transit @ Makasar | | Sorong-Surabaya | 12.00 - 14.20 | transit @ Makasar | | Jakarta-Sorong | 05.00 - 11.40 | transit @ Ujung Pandang | | Sorong-Jakarta | 12.00 - 15.10 | transit @ Ujung Pandang |
Flight From/To Ambon| Sriwijaya (www.sriwijayaair.co.id) | | Surabaya-Ambon | 06.00 - 12.05 | transit @ Ujung Pandang | | Ambon-Surabaya | 12.45 - 14.35 | transit @ Ujung Pandang |
| Lion (www2.lionair.co.id) | | Jakarta-Ambon | 01.30 - 06.50 | transit @ Ujung Pandang | | Ambon-Jakarta | 08.00 - 10.35 | transit @ Ujung Pandang |
Flight From/To Labuan Bajo| Merpati (www.merpati.com) (Daily) | | Denpasar-Labuan Bajo | 11.30 - 13.05 | | | Labuan Bajo-Denpasar | 13.35 - 15.05 | |
| Lion (www2.lionair.co.id) (Every Tuesday, Thursday, Saturday) | | Denpasar-Labuan Bajo | 11.40 - 13.10 | | | Labuan Bajo-Denpasar | 08.30 - 09.50 | | | Surabaya-Labuan Bajo | 09.30 - 14.55 | transit @ Denpasar | | Labuan Bajo-Surabaya | 08.30 - 10.40 | transit @ Denpasar |
| Trans Nusa (www.transnusa.co.id) (Every Monday, Wednesday, Thursday, Saturday) | | Denpasar-Labuan Bajo | 08.00 - 09.10 | | | Labuan Bajo-Denpasar | 16.30 - 17.35 | |
| Trans Nusa (www.transnusa.co.id) (Every Tuesday, Friday, Sunday) | | Denpasar-Labuan Bajo | 07.00 - 08.10 | | | Labuan Bajo-Denpasar | 08.35 - 09.40 | |
Flight From/To Maumere| Merpati (www.merpati.com) | | Denpasar-Maumere | 11.30 - 14.35 | transit @ --
(every Sunday, Tuesday, Friday) | | Maumere-Denpasar | 07.55 - 11.00 | transit @ --
(every Monday, Friday, Sunday) |
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